In neuroscience, the similarity matrix of neural activity patterns in response to different sensory stimuli or under different cognitive states reflects the structure of neural representational space. Existing methods derive point estimations of neural activity patterns from noisy neural imaging data, and the similarity is calculated from these point estimations. We show that this approach translates structured noise from estimated patterns into spurious bias structure in the resulting similarity matrix, which is especially severe when signal-to-noise ratio is low and experimental conditions cannot be fully randomized in a cognitive task. We propose an alternative Bayesian framework for computing representational similarity in which we treat the covariance structure of neural activity patterns as a hyper-parameter in a generative model of the neural data, and directly estimate this covariance structure from imaging data while marginalizing over the unknown activity patterns. Converting the estimated covariance structure into a correlation matrix offers a much less biased estimate of neural representational similarity. Our method can also simultaneously estimate a signal-to-noise map that informs where the learned representational structure is supported more strongly, and the learned covariance matrix can be used as a structured prior to constrain Bayesian estimation of neural activity patterns.

This article presents the first systematic review of unsupervised and semi-supervised computational text-based ideal point estimation (CT-IPE) algorithms, methods designed to infer latent political positions from textual data. These algorithms are widely used in political science, communication, computational social science, and computer science to estimate ideological preferences from parliamentary speeches, party manifestos, and social media. Over the past two decades, their development has closely followed broader NLP trends -- beginning with word-frequency models and most recently turning to large language models (LLMs). While this trajectory has greatly expanded the methodological toolkit, it has also produced a fragmented field that lacks systematic comparison and clear guidance for applied use. To address this gap, we identified 25 CT-IPE algorithms through a systematic literature review and conducted a manual content analysis of their modeling assumptions and development contexts. To compare them meaningfully, we introduce a conceptual framework that distinguishes how algorithms generate, capture, and aggregate textual variance. On this basis, we identify four methodological families -- word-frequency, topic modeling, word embedding, and LLM-based approaches -- and critically assess their assumptions, interpretability, scalability, and limitations. Our review offers three contributions. First, it provides a structured synthesis of two decades of algorithm development, clarifying how diverse methods relate to one another. Second, it translates these insights into practical guidance for applied researchers, highlighting trade-offs in transparency, technical requirements, and validation strategies that shape algorithm choice. Third, it emphasizes that differences in estimation outcomes across algorithms are themselves informative, underscoring the need for systematic benchmarking.

In neuroscience, the similarity matrix of neural activity patterns in response to different sensory stimuli or under different cognitive states reflects the structure of neural representational space. Existing methods derive point estimations of neural activity patterns from noisy neural imaging data, and the similarity is calculated from these point estimations. We show that this approach translates structured noise from estimated patterns into spurious bias structure in the resulting similarity matrix, which is especially severe when signal-to-noise ratio is low and experimental conditions cannot be fully randomized in a cognitive task. We propose an alternative Bayesian framework for computing representational similarity in which we treat the covariance structure of neural activity patterns as a hyper-parameter in a generative model of the neural data, and directly estimate this covariance structure from imaging data while marginalizing over the unknown activity patterns. Converting the estimated covariance structure into a correlation matrix offers a much less biased estimate of neural representational similarity. Our method can also simultaneously estimate a signal-to-noise map that informs where the learned representational structure is supported more strongly, and the learned covariance matrix can be used as a structured prior to constrain Bayesian estimation of neural activity patterns.

Story point estimation is an essential part of agile software development. Story points are unitless, project-specific effort estimates that help developers plan their sprints. Traditionally, developers estimate story points collaboratively using planning poker or other manual techniques. While the initial calibrating of the estimates to each project is helpful, once a team has converged on a set of precedents, story point estimation can become tedious and labor-intensive. Machine learning can reduce this burden, but only with enough context from the historical decisions made by the project team. That is, state-of-the-art models, such as GPT2SP and FastText-SVM, only make accurate predictions (within-project) when trained on data from the same project. The goal of this work is to streamline story point estimation by evaluating a comparative learning-based framework for calibrating project-specific story point prediction models. Instead of assigning a specific story point value to every backlog item, developers are presented with pairs of items, and indicate which item requires more effort. Using these comparative judgments, a machine learning model is trained to predict the story point estimates. We empirically evaluated our technique using data with 23,313 manual estimates in 16 projects. The model learned from comparative judgments can achieve on average 0.34 Spearman's rank correlation coefficient between its predictions and the ground truth story points. This is similar to, if not better than, the performance of a regression model learned from the ground truth story points. Therefore, the proposed comparative learning approach is more efficient than state-of-the-art regression-based approaches according to the law of comparative judgments - providing comparative judgments yields a lower cognitive burden on humans than providing ratings or categorical labels.

Inverse optimization has been increasingly used to estimate unknown parameters in an optimization model based on decision data.

In neuroscience, the similarity matrix of neural activity patterns in response to different sensory stimuli or under different cognitive states reflects the structure of neural representational space. Existing methods derive point estimations of neural activity patterns from noisy neural imaging data, and the similarity is calculated from these point estimations. We show that this approach translates structured noise from estimated patterns into spurious bias structure in the resulting similarity matrix, which is especially severe when signal-to-noise ratio is low and experimental conditions cannot be fully randomized in a cognitive task. We propose an alternative Bayesian framework for computing representational similarity in which we treat the covariance structure of neural activity patterns as a hyper-parameter in a generative model of the neural data, and directly estimate this covariance structure from imaging data while marginalizing over the unknown activity patterns. Converting the estimated covariance structure into a correlation matrix offers a much less biased estimate of neural representational similarity.

Inspired by recent advancements in large language models (LLMs) for Natural Language Processing (NLP), there has been a surge in research focused on developing foundational models for time series forecasting. One approach involves training LLM architectures on tokenized time series data using cross-entropy loss. Although this method has demonstrated promising results, cross-entropy loss is primarily designed for classification tasks and does not account for the distance between classes. To address this limitation, we propose using the Wasserstein loss for such architectures. To validate our approach, we fine-tuned a foundational time series model on $22$ zero-shot datasets, comparing the performance of cross-entropy loss with that of Wasserstein loss. Our results demonstrate that replacing cross-entropy loss with Wasserstein loss significantly improves point estimation.